What we do
About our project
This project aims to advance RNA therapeutics for metabolic diseases, and in particularPompe disease, a lysosomal storage disorder caused by pathogenic variants in theGAA gene leading to glycogen accumulation in muscles. We focus on antisense oligonucleotides (ASOs) to correct defective RNA splicing or upregulate gene expression, addressing the root molecular causes. Current efforts emphasize optimizing ASO delivery to challenging tissues like skeletal muscle, where poor penetration limits efficacy. By leveraging lipid nanoparticles as the delivery vehicle, we enhance stability, targeting, and cellular uptake while minimizing required dose and off-target effects. In parallel, we explore peptide-mediated delivery. This translational approach involves preclinical testing in skeletal muscle disease models to evaluate safety, biodistribution, and therapeutic outcomes, with the goal of improving patient mobility, respiratory function, and ultimately quality of life. Collaborations with experts in nanotechnology and rare diseases support our progress toward therapeutic implementation.
Our research focus
We prioritize lipid nanoparticle (LNP) formulations for ASO delivery, engineering them with muscle-specific ligands to improve tissue and intracellular delivery. Key innovations include optimization of LNP composition and functionalization of LNPs. Preclinical studies assess pharmacokinetics, glycogen reduction, and enzyme activity restoration in Pompe models. Secondarily, we test cell-penetrating peptide (CPPs) conjugates, evaluating their efficiency against toxicity risks such as immune activation or membrane disruption. This dual strategy aims to identifyoptimal, safe delivery systems for broader applications in metabolic disorders.
Funds & Grants
Metakids
United for Metabolic diseases
Collaborations
Internal Collaboration
Department of Pediatrics
Department of Neurology
Department of Internal Medicine
Department of Pathology
Center for Lysosomal and Metabolic Disorders
External Collaboration
UMC Utrecht
LUMC
Radboud UMC
Publications
Kuijper EC, Bergsma AJ, Pijnappel WWMP, Aartsma-Rus A. Opportunities and challenges for antisense oligonucleotide therapies. J Inherit Metab Dis. 2021 Jan;44(1):72-87. doi: 10.1002/jimd.12251. Epub 2020 Jun 3. PMID: 32391605; PMCID: PMC7891411.
Herrero-Hernandez P, Bergsma AJ, Pijnappel WWMP. Generation of Human iPSC-Derived Myotubes to Investigate RNA-Based Therapies In Vitro. Methods Mol Biol. 2022;2434:235-243. doi: 10.1007/978-1-0716-2010-6_15. PMID: 35213021; PMCID: PMC9703849.
Bergsma AJ, In 't Groen SL, Verheijen FW, van der Ploeg AT, Pijnappel WWMP. From Cryptic Toward Canonical Pre-mRNA Splicing in Pompe Disease: a Pipeline for the Development of Antisense Oligonucleotides. Mol Ther Nucleic Acids. 2016 Sep 13;5(9):e361. doi: 10.1038/mtna.2016.75. Erratum in: Mol Ther Nucleic Acids. 2016 Nov 29;5(11):e391. doi: 10.1038/mtna.2016.104. PMID: 27623443; PMCID: PMC5056997.
van der Wal E, Bergsma AJ, Pijnenburg JM, van der Ploeg AT, Pijnappel WWMP. Antisense Oligonucleotides Promote Exon Inclusion and Correct the Common c.-32-13T>G GAA Splicing Variant in Pompe Disease. Mol Ther Nucleic Acids. 2017 Jun 16;7:90-100. doi: 10.1016/j.omtn.2017.03.001. Epub 2017 Mar 14. PMID: 28624228; PMCID: PMC5415969.
van der Wal E, Bergsma AJ, van Gestel TJM, In 't Groen SLM, Zaehres H, Araúzo-Bravo MJ, Schöler HR, van der Ploeg AT, Pijnappel WWMP. GAA Deficiency in Pompe Disease Is Alleviated by Exon Inclusion in iPSC-Derived Skeletal Muscle Cells. Mol Ther Nucleic Acids. 2017 Jun 16;7:101-115. doi: 10.1016/j.omtn.2017.03.002. Epub 2017 Mar 14. PMID: 28624186; PMCID: PMC5415960.
Bergsma AJ, van der Wal E, Broeders M, van der Ploeg AT, Pim Pijnappel WWM. Alternative Splicing in Genetic Diseases: Improved Diagnosis and Novel Treatment Options. Int Rev Cell Mol Biol. 2018;335:85-141. doi: 10.1016/bs.ircmb.2017.07.008. Epub 2017 Sep 12. PMID: 29305015.
Our team
Dr. Atze Bergsma
Prof. Dr. Pim Pijnappel
Dr. Alessandro Iuliano
Anjali Bholasing