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Researcher

R. (Ruizhi) Deng, PhD

Post-doc

  • Department
  • Clinical Genetics
  • Focus area
  • Computational biology, Bioinformatics, Artificial Intelligence, Genetics, Brain disorder, Non-coding genome
Contact  

About R. (Ruizhi) Deng, PhD

Introduction

My research focuses on deciphering hidden genetic causes of genetic disorders by large-scale computational analysis. I have developed various tools and data resource to push the boundaries of the underestimated non-coding variants in the clinical genetics. My long-term goal is to develop advanced computational applications that enhance clinical diagnosis and facilitate the translation of research findings into real-world medical practice.

Field(s) of expertise

Expertise in bioinformatics and AI-driven approaches to improve genetic diagnostics for genetic disorders.

Education and career

Ph.D. in Bioinformatics & Genetics, Erasmus University Medical Center, Netherlands

M.Sc. in Bioinformatics, Northwest A&F University, China

B.Sc. in Veterinary medicine, Northwest A&F University, China

Publications

Selected publications in 5 years:

1. BRAIN-MAGNET: a functional genomics atlas aids interpretation of noncoding variants

R. Deng et al. preprint, medRxiv 2024.04.13.24305761; https://doi.org/10.1101/2024.04.13.24305761 (accepted for publication at Cell)

2. AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model. R. Deng et al. Acta Neuropathologica,AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model | Acta Neuropathologica

3. Comprehensive multi-omics integration identifies differentially active enhancers during human brain development with clinical relevance.

S. Yousefi, R. Deng et al. Genome Medicine, https://www.doi.org/10.1186/s13073-021-00980-1

4. Case report: two new cases of chromosome 12q14 deletions and review of the literature.

R. Deng et al. Frontiers in Genetics, https://doi.org/10.3389/fgene.2021.716874

The full list of publications in PubMed

Teaching activities

Supervision of students

Other positions

Visiting postdoctoral researcher, Kundaje lab of Stanford University, 1/12/2025-31/11/2027

Scholarships, grants, and awards

1. Rubicon NWO (€262,824, highly competitive and prestigious international mobility grant for early-career researchers in the Netherlands to gain postdoctoral experience abroad, success rate ~13%, 2025)

2. Sophia Research foundation (€297,000, co-applicant, 2023).

3. Spastic Paraplegia Foundation ($150,000, co-applicant, 2022).

4. Best Abstract Prize (€600, The European Society of Human Genetics conference, 2022)

My Groups